PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 321853 | ||||||||
Common Name | ARALYDRAFT_321853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 248aa MW: 28763.8 Da PI: 4.7816 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.3 | 6.8e-35 | 43 | 135 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e+isw+e+g+ fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv++ + weF+++ F+kg++ell++i+ 321853 43 FLVKTYKVVDDATTDEVISWNEDGTGFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGQRELLSNIR 130 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ 321853 131 RRKSQ 135 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 7.07E-33 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.2E-57 | 39 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.9E-36 | 40 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-30 | 43 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEDAGEHSRC SDNINDEERL SLEFMIGKST STAELEPPPP PPFLVKTYKV VDDATTDEVI 60 SWNEDGTGFV VWQPAEFSRD LLPTLFKHCN FSSFVRQLNT YGFRKVTTIR WEFSNEMFRK 120 GQRELLSNIR RRKSQQWSHN KSHYQVVSTT TTVKQEDHQR IGIDHHHEDQ RSSATSSSFV 180 YTALLDENKC LKNENELLSC ELGKTKKKCK QLMELVERYR VDDEDETDEN DDDEEDDGLK 240 LFGVKLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 3e-22 | 41 | 132 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 3e-22 | 41 | 132 | 5 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 321853 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029452 | 0.0 | BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879948.1 | 0.0 | heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 1e-151 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | D7LHA4 | 0.0 | D7LHA4_ARALL; AT-HSFB3 | ||||
STRING | fgenesh1_pm.C_scaffold_4001910 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10814 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-149 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | 321853 |
Entrez Gene | 9317857 |