PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 321760 | ||||||||
Common Name | ARALYDRAFT_321760, WRKY55 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 33019.1 Da PI: 6.6023 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.7 | 1e-27 | 164 | 224 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ 321760 164 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 224 8****************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-27 | 155 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 163 | 225 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 164 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.128 | 164 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEEVMSMIFH GMKLVKTLES SLPEKPPESL STSLDEIAKT FSDANERLKM LLEIRNSETA 60 LNQLKPVVAS VANQMLMQME PSLMQEYWLR CGGSTSSHEG TEAMFQTQLM AVDGGGGRNL 120 TAAAEGSGAS GSSTPRQRRR KDEGEQQTVL VAALRTGNTD LPPDDNHTWR KYGQKEILGS 180 RFPRAYYRCT HQKLYNCPAK KQVQRLNDDP FTFRVTYRGS HTCHIYSTAP TASSAAPTAP 240 IPSVTTGHSV DYGLAVVDMA DAMFGSGGVG TNMDFMFSIN DPSQHHQRFR QLDDGDENK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-21 | 164 | 223 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 321760 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493584 | 0.0 | AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740. | |||
GenBank | DQ056575 | 0.0 | DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879888.1 | 0.0 | WRKY transcription factor 55 | ||||
Swissprot | Q9SHB5 | 0.0 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | D7LFT8 | 0.0 | D7LFT8_ARALL; WRKY DNA-binding protein 55 | ||||
STRING | fgenesh1_pm.C_scaffold_4001817 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-158 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | 321760 |
Entrez Gene | 9317802 |
Publications ? help Back to Top | |||
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