PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 321705 | ||||||||
Common Name | ARALYDRAFT_321705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21824.6 Da PI: 9.3017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.9e-10 | 62 | 155 | 4 | 87 |
E-..-HHHHT.T-EE--HHH.HTT.........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS B3 4 vltpsdvlks.grlvlpkkfaeeh.........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 +lt sdv + +rl+l k+ ++++ + +++++++ ++g+ e+ ++++kk+ ++++ GWk+Fvk +L+ Df+++ + ++ 321705 62 QLTGSDVKDNqCRLMLGKEQVKKMmvdvlgkaeK---LgiHGQKVSVYGPKGEIHEMVFKMWKKDTPILMSVGWKNFVKKYKLEkHVDFLTIWMFRH 155 67788888777************9***9866551...1445679********888888888**********************96679988765544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-12 | 55 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-14 | 62 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-12 | 63 | 163 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDVTPDEAEV SLALLLLGQY PVFFEKEEEE EEESVSEDEL EVKISNQTYE KKGKKKRKVA 60 EQLTGSDVKD NQCRLMLGKE QVKKMMVDVL GKAEKLGIHG QKVSVYGPKG EIHEMVFKMW 120 KKDTPILMSV GWKNFVKKYK LEKHVDFLTI WMFRHKETRK ICFAIDSTRI PVKGMLSPKI 180 LNAAFKNPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 58 | KKKRKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 321705 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883132.1 | 1e-107 | putative B3 domain-containing protein At4g03160 | ||||
Swissprot | Q9ZR15 | 7e-78 | Y4316_ARATH; Putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | D7LEF9 | 1e-135 | D7LEF9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_4001762 | 1e-136 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 6e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 321705 |
Entrez Gene | 9315914 |