PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317478
Common NameARALYDRAFT_317478
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 342aa    MW: 38861.4 Da    PI: 4.4985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317478genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-1925112196
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             ff+v+++ +  +s  +v+p+++ e+   + + +kt +l  + gr W+v +  + +++++++++GW +Fv +n+Lk+g+f++F +dg+++    v++
  317478  25 FFTVFLSQY--SSESMVIPRSYYEHL--PRRLPKTAILVGTGGRFWKVAM--TSRREQVYFEQGWGNFVADNELKDGEFLTFVFDGHKSY--EVSI 112
             677774444..44559*******554..456899****************..99999**************************9986655..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2118115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2222118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.19823116IPR003340B3 DNA binding domain
CDDcd100172.94E-1923113No hitNo description
PfamPF023624.3E-1625112IPR003340B3 DNA binding domain
SMARTSM010196.4E-2025116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-5242334IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0081243331IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-6250328IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MWATKSRRCA VHTSSMASSD VLPRFFTVFL SQYSSESMVI PRSYYEHLPR RLPKTAILVG  60
TGGRFWKVAM TSRREQVYFE QGWGNFVADN ELKDGEFLTF VFDGHKSYEV SIYGRGDCKE  120
TRAVIQVEEI SDDDTEDYSV SLHSLNNVSL HSLDNDSLQA DVEIESDSLM ADVEIESDSL  180
QVDAEIESDS DYSPENPDTA STSVESVEVV NPTTSMTSRQ RSYKKKTIEN PELYLDDPNN  240
ICFETCLKLR KFELLVDAQF VKDYSLKFGD QVDYIDGYGK LTATMTKWAD QRVCIKKWQK  300
ICDRNSLTEN DSILCEVLRN EDKVVYAIKI HIFRDAAAAS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-19141181104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap317478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189071e-134AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026861e-134CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886540.10.0B3 domain-containing protein REM21 isoform X2
SwissprotQ9M8K20.0REM21_ARATH; B3 domain-containing protein REM21
TrEMBLD7L4S80.0D7L4S8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_30004940.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.10.0B3 family protein