PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 317287 | ||||||||
Common Name | ARALYDRAFT_317287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23705.7 Da PI: 10.5027 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55 | 1e-17 | 20 | 69 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++en+ r +tfskR++gi+KK +EL +Cd+eva +ifs+ k y+++ 317287 20 KKVENYGDRMITFSKRKAGIFKKMNELVAMCDVEVAFLIFSQAKKPYTFA 69 6789********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.19E-23 | 12 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.212 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-21 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-19 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSTKQAKGRK TKGKQKIEMK KVENYGDRMI TFSKRKAGIF KKMNELVAMC DVEVAFLIFS 60 QAKKPYTFAH PSMQEVADRL KNPSRQEPLA KDDTGPLVEA YKKRRFHDLI KKMEALEEEL 120 TMDLEKLKLL KESRNEKKLD KMWWNFPSKG LSVEELKQRH QAIVELRDNL CDNMALLRLG 180 KDGGSSSVRV GRRLSGGVRL FDREA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 317287 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC016829 | 0.0 | AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056586 | 0.0 | DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882329.2 | 1e-150 | MADS-box transcription factor 23 | ||||
TrEMBL | D7L216 | 1e-148 | D7L216_ARALL; MADS-box family protein | ||||
STRING | fgenesh1_pm.C_scaffold_3000303 | 1e-149 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-121 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | 317287 |
Entrez Gene | 9320495 |