PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 314222 | ||||||||
Common Name | ARALYDRAFT_314222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21274.8 Da PI: 10.6692 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ ++r+ tf +Rr+ i+KKA L L ++evav+++s+t+ y+y 314222 9 KRIEDITKRKATFLRRRKSIFKKADALAKLWNVEVAVLVISPTNIPYTY 57 79******************************************99999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.367 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-21 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-16 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGRSKIEIKR IEDITKRKAT FLRRRKSIFK KADALAKLWN VEVAVLVISP TNIPYTYGNP 60 CFNDVVERIQ NPSASSKLDS LMKELEQIKE LEEVLRKRQQ KNREKSNMKG IVDLKLEDLV 120 AFKGKLEAHQ AGLKRKHVEM EDLSSPSMLS KNTKKKKTRT ESSSGQSREM YELRPRIPRN 180 YLE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 314222 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141241 | 1e-169 | AY141241.1 Arabidopsis thaliana MADS-box protein AGL102 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891382.2 | 1e-122 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | D7KAX6 | 1e-130 | D7KAX6_ARALL; MADS-box protein | ||||
STRING | fgenesh1_pm.C_scaffold_1003002 | 1e-131 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16164 | 5 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47760.1 | 8e-88 | AGAMOUS-like 102 |
Link Out ? help Back to Top | |
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Phytozome | 314222 |
Entrez Gene | 9330129 |