PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313821
Common NameARALYDRAFT_313821
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 282aa    MW: 32647.4 Da    PI: 4.8849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313821genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-5161381128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kg 97 
             lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  +  ++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++++    ++
  313821   6 LPPGFRFHPTDEELVGYYLHRRNEGLQIEL-EIIPLMDLYKFDPWELPeKsFLPDRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRNIVCHssssSS 107
             79****************************.99**************94334445777*************************************98776666 PP

     NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
             +++g++ktLvfy grap g +t+Wvmheyrl
  313821 108 SVTGCRKTLVFYMGRAPFGGRTEWVMHEYRL 138
             67***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-574162IPR003441NAC domain
PROSITE profilePS5100556.0026162IPR003441NAC domain
PfamPF023655.8E-287138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVGSYLPPGF RFHPTDEELV GYYLHRRNEG LQIELEIIPL MDLYKFDPWE LPEKSFLPDR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRNIVC HSSSSSSSVT GCRKTLVFYM  120
GRAPFGGRTE WVMHEYRLFD NDTSQGSLNF KGDFALCRVI KRNEHTRKKS ETNSPEVSDE  180
LLSNNVKIFC QASDLEKGSC DASNTLWSSP DFILESFFQG NSQSQTEEDS GSQVFPLPEL  240
ENPPEVFADL NFDWEMDNPF MFDYHPEAHM NNEVMSYHIL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-51616817171NO APICAL MERISTEM PROTEIN
1ut4_B8e-51616817171NO APICAL MERISTEM PROTEIN
1ut7_A8e-51616817171NO APICAL MERISTEM PROTEIN
1ut7_B8e-51616817171NO APICAL MERISTEM PROTEIN
4dul_A8e-51616817171NAC domain-containing protein 19
4dul_B8e-51616817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap313821
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-121CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-121AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890994.10.0NAC domain-containing protein 86
SwissprotO496971e-86NAC71_ARATH; NAC domain-containing protein 71
TrEMBLD7KHL20.0D7KHL2_ARALL; ANAC011
STRINGfgenesh1_pm.C_scaffold_10026010.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.10.0NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]