PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313613
Common NameARALYDRAFT_313613
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 296aa    MW: 34573.2 Da    PI: 8.3964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313613genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06131157127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +++e+C+f+++++ C  G+ C+++H+p
   313613 131 PGEENCPFYLKNHLCGWGSDCCYNHPP 157
              589**********************97 PP
2zf-CCCH26.61e-08170191527
              --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
               C+ff + G Ck+G++C+F H++
   313613 170 DCKFFKA-GSCKRGSNCQFYHPR 191
              5997777.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.526130158IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4132157IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5166191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6169190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436170192IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6170191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4171191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MANVSFTLDS QGQTQELRPS GLGGRSDERT GRRHGKEPEK MEKEDLSFGI SEEGEIPDQQ  60
ESDAFSDARY YLRQQQRVSN VEMQRRSHET ESRLWQRART PDSRGSGSTM MLEERTQGRS  120
EPVLSAYPIR PGEENCPFYL KNHLCGWGSD CCYNHPPLHE IPYRIGNKLD CKFFKAGSCK  180
RGSNCQFYHP RDGAEPMRQG RTPDLRRNDS GRRRYKTEAR SWPEKREKED SGFRRNEVGQ  240
FRDHQDSDED SQEILLQQRP RDVEMRKRRV HQEKHLKIHV KDAMERSWPC PSERG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap313613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686674e-39AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026844e-39CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867243.10.0LOW QUALITY PROTEIN: putative zinc finger CCCH domain-containing protein 10
SwissprotQ9C7P11e-124C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLD7KDV60.0D7KDV6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10023930.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.11e-127C3H family protein