PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 312791
Common NameARALYDRAFT_312791
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 1144aa    MW: 128003 Da    PI: 7.0366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
312791genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-0710381085455
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH    4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55  
              +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  312791 1038 SHSLAERVRRGKINERLRCLQDMVPGC----YKAMGMATMLDEIINYVQSLQ 1085
              8*************************8....355999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF143801.6E-16164240IPR032872Wall-associated receptor kinase, C-terminal
PfamPF139472.9E-7270375IPR025287Wall-associated receptor kinase, galacturonan-binding domain
PfamPF143801.4E-15406481IPR032872Wall-associated receptor kinase, C-terminal
Gene3DG3DSA:2.60.120.2002.9E-10501575IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561121.89E-75547841IPR011009Protein kinase-like domain
PROSITE profilePS5001137.983569841IPR000719Protein kinase domain
SMARTSM002202.8E-39569842IPR000719Protein kinase domain
PfamPF077142.8E-45572841IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001070575597IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.203.8E-23576633No hitNo description
Gene3DG3DSA:1.10.510.101.4E-40634839No hitNo description
PROSITE patternPS001080689701IPR008271Serine/threonine-protein kinase, active site
SuperFamilySSF474591.96E-1510321101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-910321089No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1510341096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.36410341084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-510381085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-910401090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0042631Biological Processcellular response to water deprivation
GO:0048573Biological Processphotoperiodism, flowering
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005886Cellular Componentplasma membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030247Molecular Functionpolysaccharide binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MSIFLLFITF VVFSIADLPS CFSADQQYQK CRSGLTCGSG HKVFEKNTTY PFWGSKKPKF  60
CGQTPFELSC DGNQNLTLAI GDLTLRVVSA NLENQTISVA DDSLLDGGCP EIWNFTGENQ  120
FTLDSNTEKI DLFICSSNPG KASLSNFTCK RSQETSTTYH VFVSPDFGRN CTKIGDVPML  180
RSVKDHLHIR GSNLTLENAL RKGFGLSYRL KDTSCRRCSN SGGICGSDSG SESFRCLCED  240
RPHMSSCDDG DGVNPTQATQ TLSLDPKFKA CEPKSCGRGP EISYPFYLSG KQESFCGYPS  300
FELACDYEQK LPVLGISGEE YVIKNISYLT QSFQVLNSKA SHDDPCPSPL HNLTLHRTPF  360
FVNPSHINFS ILYNCSDHLL EDIRTYPLTC PGNTSRLRSV GIFDRRKLEK EKKIASMSCQ  420
KLVDVPVLAS DESDVMGMTY VEILKRGFVL NWTANSCFRC ITSGGRCGTD QQEFVCLCPD  480
GPNIHDTCTN GKNGKRRRVM VKILIAASIF WYVYHRRKTK SYRTSSALLP RNISSDPSSK  540
SFDVEKAEEL LVGVHLFSYE ELEEATNNFD PSKELGDGGF GTVYYGKLKD GRSVAVKRLY  600
DNNFKRAEQF RNEVEILTGL RHPNLVALFG CSSKQSRDLL LVYEYVANGT LADHLHGPQA  660
NPSSLPWSIR LKIAVETASA LKYLHASKII HRDVKSNNIL LDQNFNVKVA DFGLSRLFPM  720
DRTHVSTAPQ GTPGYVDPDY HLCYQLSNKS DVYSFAVVLM ELISSLPAVD ITRPRNEINL  780
SNMAVVKIQN HELRDMVDPS LGFDTDTRVR QTVIAVAELA FQCLQSDKDL RPCMSHVQDT  840
LTRIQNNGFG SEMDVVDVNK SGPLVAQSPD SVIVKWDIMA NFENLSSDFQ TIAMDIYSSI  900
TQAADLNNNY SNLHFQAFHP SSTSLDSLFL HHHQHHHQQQ LLRFPGNSPD DNSNNFSSTS  960
SFLHSDHNNV DEPKKRKALL HTMSSSENSG VSDNTNVITT ETGSLRRGKR LKKKKEEEDE  1020
KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDM VPGCYKAMGM ATMLDEIINY  1080
VQSLQNQVEF LSMKLNAASS FYDFSSETDA VDSMQRAKAR ETVEMGRQTR DGSPVFHLST  1140
WSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2qkw_B4e-5856183733306Protein kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494498KRRRV
210091015RLKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable receptor-like serine/threonine-protein kinase involved in abscisic acid (ABA) signaling. Acts as a positive regulator of abiotic stress response. {ECO:0000269|PubMed:25533478}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap312791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172690.0AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBankAY1382530.0AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankBT0052680.0BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867437.10.0LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2
SwissprotP0C5E20.0LRL12_ARATH; LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
TrEMBLD7KGD70.0D7KGD7_ARALL; F15H18.11
STRINGfgenesh1_pm.C_scaffold_10015710.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-121BR enhanced expression 1
Publications ? help Back to Top
  1. Shiu SH,Bleecker AB
    Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(19): p. 10763-8
    [PMID:11526204]
  2. Shin KH, et al.
    Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.
    Plant Cell Rep., 2015. 34(3): p. 495-505
    [PMID:25510357]
  3. Lim CW,Yang SH,Shin KH,Lee SC,Kim SH
    The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.
    Plant Cell Rep., 2015. 34(3): p. 447-55
    [PMID:25533478]