PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZX1HW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 395aa    MW: 44901.9 Da    PI: 6.9539
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZX1HWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.4e-2169159190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY +++k  GF vrk    k  ++g+++kr+f C++ g r+e++ +  +++r +++et+++C+akl + ++k +++w+v k+ leHnHel+
  Araip.ZX1HW  69 EFYMRFGKCHGFGVRKGDYGKD-DDGNVIKRRFFCNRDGLRDEKHYNrFDRKRCHKPETEMNCQAKLSIYLNKeSSNWKVRKVILEHNHELV 159
                  6****************98887.9999****************99985678888******************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.3E-4513IPR001878Zinc finger, CCHC-type
PfamPF031019.6E-1969159IPR004330FAR1 DNA binding domain
SuperFamilySSF577564.71E-5320349IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.3E-4329349IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEYTGHSEKF CMEDESDCVG DVVSSDADEF DVEQLDPSGQ DDVSDGDVFG LTAAEIENKV  60
FRTEERAYEF YMRFGKCHGF GVRKGDYGKD DDGNVIKRRF FCNRDGLRDE KHYNRFDRKR  120
CHKPETEMNC QAKLSIYLNK ESSNWKVRKV ILEHNHELVA RCMFNSIYNV PVMTTCLDPI  180
EKCAAMVYTR AIFTNVKKEI DAVGALNIVS KRRVSTMVVY TMEEYGNPGK PVDAKAVEDY  240
SEKKDVADDQ GFLLRHATLH AAAQWLLFLG AQSHELFNVA MRGICSMCVD MEGLRGDGYD  300
QTNTNTEVGV RDPTVVQTKG APSTRGVNGK KRRCMTCRRT GHTKRRCIEG FKKASVKLHN  360
LEDDANVTPH KEKVGLNMFH VVVLKWVCGY GIWVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZX1HW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989425.11e-120protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
TrEMBLA0A445B7K31e-116A0A445B7K3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2367223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.15e-09FAR1-related sequence 11