PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Z57SD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 593aa MW: 66387.2 Da PI: 4.4094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.9 | 1.1e-45 | 6 | 124 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrFhPtd+elv++yL++kv gk ++ ++i ++iy++ePw+Lp + ewyfF+ dkky++g++++rat +gyWk+tgkd+ ++ ++++ Araip.Z57SD 6 GPGFRFHPTDDELVQYYLRRKVIGKLNHH-DHIGVINIYDYEPWQLP------DLEWYFFTVLDKKYEKGEKTKRATVNGYWKTTGKDRGIKY-GDRQ 95 59**********************99887.89**************9......579*************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+++grap+g++++Wvmheyr+ Araip.Z57SD 96 VGMKKTLVYHEGRAPTGKRSNWVMHEYRM 124 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-48 | 5 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.204 | 5 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 7 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MSRILGPGFR FHPTDDELVQ YYLRRKVIGK LNHHDHIGVI NIYDYEPWQL PDLEWYFFTV 60 LDKKYEKGEK TKRATVNGYW KTTGKDRGIK YGDRQVGMKK TLVYHEGRAP TGKRSNWVMH 120 EYRMVDEQLA EVGYQLSQGL FVLVYLCFWW WWAKDAFVLC RIFEKSGMGP KNGEKYGAPF 180 REEDWVEDGD LLEPIADEPV VELSVDQSDA FLETDDLEKK LGTHVVDGSA DLPPNPPNYF 240 YGECSHYPQH QEEFVEVPKP LEGTEGRNFD VTGPYAEDTC LENHEMNHNG NSSGFIYGDV 300 NSDEIMDSIV DPLIGAELFL ETDDLLNPIE GNSSGADPYT VEGNHPRADP YAAEGNPPGP 360 DPYTAEGNYP GTDPYAVDML DEYLALPDDD ILRYISFDDS PPSMEGENPI LEQIPPLIQQ 420 NVEEEAKDVS EEKQQKVEGE ATNIFKTNKH DLEANSSRGG SASDDANPIA KRFKKWLEDI 480 PAAPAFAAEL PSKKDALQLH SAPQSSNTTH VTAGMVSITN ITGRGNDMNP MVAKIGGGFN 540 HPIISAVVLI PVSGLLCGKT LFVLTYGWAF LVTFSFLFAT VTCKIGTFMY SGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-34 | 5 | 124 | 15 | 140 | Stress-induced transcription factor NAC1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Z57SD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016175325.1 | 0.0 | NAC domain-containing protein 53 | ||||
Refseq | XP_025674692.1 | 0.0 | NAC domain-containing protein 53 | ||||
TrEMBL | A0A444XRM0 | 0.0 | A0A444XRM0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5347 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-83 | NAC domain containing protein 2 |