PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Z3VQJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 564aa MW: 64240.9 Da PI: 8.3655

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Z3VQJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.9e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ + +w+vt + ++HnHel Araip.Z3VQJ 62 EYYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgSPEWRVTGFANHHNHELL 155 69***********9998877356667999*********99999999***************9988899************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-17	62	155	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.273	438	474	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-6	445	472	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-5	449	476	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MSEEAGSMLV AYDDPSDQRS LSLDDTSSTE ESPGETRLSL ETANDAIPYI GQRFATHDAA 60 YEYYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTE SKPQRNRKSS 120 RCGCQAYMRI SKTTEFGSPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKNRILMF 180 AKTGISVHQM MRLMELEKCV EPGYLPFTEK DAFLGFMNGK APQTILTDQN ICLKDAISTE 240 LPTTKHAFCI WMIVAKFPSW FNAVLGDRYN EWKAEFYRLY NLESVEDFEL GWREMVCSYG 300 LHSNRHMVNL YSSRSLWALP FLRSHFLAGM TTTGQSKSIN AFIQRFLSAQ TRLAHFVEQV 360 AVAVDFKDQT GEQQTMQQNL QNICLKTGAP MESHAATILT PFAFSKLQEQ LVLAAHYASF 420 PIEDGFLVRH HTKAEGGRKV YWSPQEGIIS CSCHQFEFSG ILCRHSLRVL STGNCFQIPD 480 RYLPIRWRRI SIPSSKLAQS APNDHTERVQ FLQNIVSSLI TESAKSKERL DIATEQVSIL 540 LSRIREQPIS LHGARDFSSI NRNL

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MSEEAGSMLV AYDDPSDQRS LSLDDTSSTE ESPGETRLSL ETANDAIPYI GQRFATHDAA  60
YEYYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTE SKPQRNRKSS  120
RCGCQAYMRI SKTTEFGSPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKNRILMF  180
AKTGISVHQM MRLMELEKCV EPGYLPFTEK DAFLGFMNGK APQTILTDQN ICLKDAISTE  240
LPTTKHAFCI WMIVAKFPSW FNAVLGDRYN EWKAEFYRLY NLESVEDFEL GWREMVCSYG  300
LHSNRHMVNL YSSRSLWALP FLRSHFLAGM TTTGQSKSIN AFIQRFLSAQ TRLAHFVEQV  360
AVAVDFKDQT GEQQTMQQNL QNICLKTGAP MESHAATILT PFAFSKLQEQ LVLAAHYASF  420
PIEDGFLVRH HTKAEGGRKV YWSPQEGIIS CSCHQFEFSG ILCRHSLRVL STGNCFQIPD  480
RYLPIRWRRI SIPSSKLAQS APNDHTERVQ FLQNIVSSLI TESAKSKERL DIATEQVSIL  540
LSRIREQPIS LHGARDFSSI NRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Z3VQJ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009777	0.0	AP009777.1 Lotus japonicus genomic DNA, clone: LjT13C08, TM1961, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363108.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A103XML8	0.0	A0A103XML8_CYNCS; FAR1 DNA binding domain-containing protein
STRING	GLYMA10G00380.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]