PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Z2B8F

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HRT-like

Protein Properties

Length: 388aa MW: 44266.7 Da PI: 9.9279

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Z2B8F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.7	4e-18	269	299	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dGsvC ++P++ RKRC +HKGmRi Araip.Z2B8F 269 ICGVALGDGSVCINTPAERRKRCPQHKGMRI 299 8*****************************7 PP
2	HRT-like	57.8	1.8e-18	351	381	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs+C+r PvkgRKRC+eHKG++i Araip.Z2B8F 351 ICGIILYDGSPCRRVPVKGRKRCQEHKGKKI 381 8***************************997 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MVAVPNQDHH HSSFIFKRLK REECSHTKHD SIFSKWKILI GASDWEDHSK GKEGCARYRI 60 HNLPEKACPG VYELGIAVSS RSDLGRQIYK LAPECVVVTY LGETDNVRDR LQCYGRDGSH 120 LHTKTSLEYS IYDSLQKKRP LFQEIFSQGY PIVYRWVAMN NKEEAKKIES QLLKTFDYAW 180 NISSNGCRRP NDILQKINKI SSSTRTISNM ARELLPFTRK QVGIRIKVDE EEEDSDGIYS 240 FLSRVFKFNK SRPRKVKNIV IANQQDAIIC GVALGDGSVC INTPAERRKR CPQHKGMRIN 300 NVSPAKAFVS PKSKSNLVSE INKFMDQNVS NDDVQGIPKK PVEESSSETN ICGIILYDGS 360 PCRRVPVKGR KRCQEHKGKK ICAKQKMI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MVAVPNQDHH HSSFIFKRLK REECSHTKHD SIFSKWKILI GASDWEDHSK GKEGCARYRI  60
HNLPEKACPG VYELGIAVSS RSDLGRQIYK LAPECVVVTY LGETDNVRDR LQCYGRDGSH  120
LHTKTSLEYS IYDSLQKKRP LFQEIFSQGY PIVYRWVAMN NKEEAKKIES QLLKTFDYAW  180
NISSNGCRRP NDILQKINKI SSSTRTISNM ARELLPFTRK QVGIRIKVDE EEEDSDGIYS  240
FLSRVFKFNK SRPRKVKNIV IANQQDAIIC GVALGDGSVC INTPAERRKR CPQHKGMRIN  300
NVSPAKAFVS PKSKSNLVSE INKFMDQNVS NDDVQGIPKK PVEESSSETN ICGIILYDGS  360
PCRRVPVKGR KRCQEHKGKK ICAKQKMI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Z2B8F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016203834.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Refseq	XP_025656211.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A444YZP3	0.0	A0A444YZP3_ARAHY; Uncharacterized protein
STRING	XP_007152922.1	1e-147	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-93	effector of transcription2