PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Z18JU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 103aa MW: 11932.7 Da PI: 10.3899 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.5 | 2.4e-22 | 34 | 84 | 2 | 55 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 +Dgy+WrKYG+K+ k+s+fprsYYrCt gC++kk r +dp+ v +tY g Araip.Z18JU 34 EDGYKWRKYGKKSLKKSPFPRSYYRCTAIGCNTKK---RYMDDPTHVLTTYVGA 84 8**********************************...8899*********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-20 | 21 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-19 | 27 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.898 | 28 | 90 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-17 | 33 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 34 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MALVADTMSM NNKRNKNNLS KITYLTESES ENLEDGYKWR KYGKKSLKKS PFPRSYYRCT 60 AIGCNTKKRY MDDPTHVLTT YVGARSRFAT NPPPSIKIFQ PLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-16 | 26 | 83 | 10 | 70 | Probable WRKY transcription factor 4 |
2lex_A | 1e-16 | 26 | 83 | 10 | 70 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Z18JU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016185367.1 | 1e-49 | probable WRKY transcription factor 68 | ||||
Refseq | XP_025635754.2 | 1e-49 | WRKY transcription factor 68-like | ||||
Swissprot | O22900 | 3e-22 | WRK23_ARATH; WRKY transcription factor 23 | ||||
Swissprot | Q9FGZ4 | 4e-22 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A445AFD3 | 6e-39 | A0A445AFD3_ARAHY; Uncharacterized protein | ||||
STRING | AES82212 | 4e-22 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-24 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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