PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Z00VV | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 167aa MW: 18708.2 Da PI: 8.8953 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 72.7 | 1.3e-22 | 5 | 66 | 6 | 67 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldesl 67 +e+vCyv CnfCnt lavsvP +sl+++vtvrCGhC++lls + ++ s + +++++l+ s Araip.Z00VV 5 GTERVCYVYCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSSQKQHLSFQDPSSKELGSSS 66 589***************************************99999999999999998765 PP | |||||||
2 | YABBY | 131.9 | 8.3e-41 | 79 | 144 | 104 | 170 |
YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Araip.Z00VV 79 VDHDPQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 144 44556788888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.0E-60 | 6 | 144 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 89 | 137 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-5 | 92 | 138 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDMMGTERVC YVYCNFCNTT LAVSVPCSSL LTIVTVRCGH CANLLSSQKQ HLSFQDPSSK 60 ELGSSSSRCN KLSAAFDPVD HDPQPRIPPI RPPEKRQRVP SAYNRFIKEE IQRIKASNPD 120 ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QAKLDQGEGT QKSNGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Z00VV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095127 | 2e-86 | BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936114.1 | 1e-100 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_025614300.1 | 1e-100 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 7e-71 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A445BX72 | 6e-99 | A0A445BX72_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G10210.3 | 1e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-60 | YABBY family protein |
Publications ? help Back to Top | |||
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