PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YZ7MJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 534aa    MW: 59088.3 Da    PI: 7.6953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YZ7MJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-1859105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
      Araip.YZ7MJ  59 KGGWTAEEDETLRNAVATYKGKNWKKIAEYFP-DRTEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding605.3e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd+++v++v ++G+  W++Iar ++ gR +kqc++rw+++l
      Araip.YZ7MJ 111 KGPWTLEEDDKIVELVSKFGPTKWSLIARSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding55.61.2e-17163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT +E++ l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++
      Araip.YZ7MJ 163 KDAWTLDEELALINAHHTHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.31854105IPR017930Myb domain
SuperFamilySSF466892.44E-1956119IPR009057Homeodomain-like
SMARTSM007171.8E-1658107IPR001005SANT/Myb domain
PfamPF002491.1E-1659105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2061114IPR009057Homeodomain-like
CDDcd001671.5E-1462105No hitNo description
PROSITE profilePS5129431.605106161IPR017930Myb domain
SuperFamilySSF466891.83E-31108204IPR009057Homeodomain-like
SMARTSM007173.9E-17110159IPR001005SANT/Myb domain
PfamPF002491.3E-17111157IPR001005SANT/Myb domain
CDDcd001676.66E-15113157No hitNo description
Gene3DG3DSA:1.10.10.601.2E-26115164IPR009057Homeodomain-like
SMARTSM007175.6E-17162210IPR001005SANT/Myb domain
PROSITE profilePS5129421.674162212IPR017930Myb domain
PfamPF002494.0E-16163206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23165212IPR009057Homeodomain-like
CDDcd001679.02E-13165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLELKTEACC LENKQSTAAS CSSVSEGSGS PINKSTEMCG PTSTSPSHRR ITGPIRRAKG  60
GWTAEEDETL RNAVATYKGK NWKKIAEYFP DRTEVQCLHR WQKVLNPELV KGPWTLEEDD  120
KIVELVSKFG PTKWSLIARS LPGRIGKQCR ERWHNHLNPD IKKDAWTLDE ELALINAHHT  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGR LPPVPKNNAQ VAVKDTIRLS  240
TSKTIPVCSS KELNLAVETP FEPTTVSMLD ESGMNQSSSG TVRDVRDSSS VPANESADSD  300
GVECKPGSSN IDLAWSNSKP VSIVNFRITC GTNFENSGLS VNSKFERCVD NCEMSCSSRS  360
IRTSFSQESP TCGSLCYEPP QLSGSVPLDS LSLSLQNEYC SNPMLSPIDY FTPASVKGSE  420
LCSETPESFL KKAADTFPNT PSILRRRNRV ETQTPPCKLL KVENHSCTSN ESERTKDNSG  480
SEVGRFSESP ASHDNESDLP KAYNASPPYQ LRSKRTAVLK SVEKQLEFAF EEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YZ7MJ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020976971.10.0transcription factor MYB3R-3
RefseqXP_025647721.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-147MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A445DGJ90.0A0A445DGJ9_ARAHY; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-138myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]