PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.YP44K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 352aa MW: 37994.7 Da PI: 6.3928 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 257 | 290 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Araip.YP44K 257 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.0E-75 | 3 | 346 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.583 | 251 | 287 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-16 | 251 | 301 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 255 | 288 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.28E-14 | 255 | 314 | No hit | No description |
CDD | cd00202 | 5.35E-14 | 256 | 313 | No hit | No description |
Pfam | PF00320 | 2.4E-15 | 257 | 290 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 257 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MVGPNFMDEL DCGNFFDHID DLLDFPVEDV DGAGAAAFPA AAAAGNCNSL ASIWPPETDS 60 FPGSDSVFSR NSASDLSAEL SVPYEDIVQL EWLSNFVEDS FSGGSLTMKK VEQPSCTTKD 120 DSAHNQFQTS SPVSVLESSS SCSGSKVPPR SPEVYIPVPC GRARSKRPRP ATFNPRPAMQ 180 LISPASSFVG ENMQPNVISA TKAYSDSENV AESQPVMKMP KQVSGEPKKK KKIKVTPPSL 240 GQADDSNQNA SQPVRKCMHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS 300 PTFCPSVHSN SHKKVLEMRC KGIEKSGFAN HHADASPELI PNTNSSLTLE YI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 169 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.YP44K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016175490.1 | 0.0 | GATA transcription factor 8 | ||||
Refseq | XP_025680015.1 | 0.0 | GATA transcription factor 8 | ||||
TrEMBL | A0A444XTK7 | 0.0 | A0A444XTK7_ARAHY; GATA transcription factor | ||||
STRING | XP_007143712.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-42 | GATA family protein |