PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YGP1F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 576aa    MW: 62724.4 Da    PI: 7.7493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YGP1FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07265285526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Araip.YGP1F 265 PCPEFRK-GSCSKGDSCEYAHG 285
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.8E-1619169IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-1325146IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-759132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.28363171IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00996393IPR002110Ankyrin repeat
CDDcd002044.04E-1165160No hitNo description
SMARTSM002480.03898130IPR002110Ankyrin repeat
PROSITE profilePS500889.88598133IPR002110Ankyrin repeat
SMARTSM003561.8E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648260287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4263287IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5265285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4293323IPR000571Zinc finger, CCCH-type
SMARTSM0035645295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MESKINNKTC QEGLHHRISA LLEFSASDDV TAFKEAIEKE GHNVGETGLW YGRRIGTKEV  60
GYEERNPLMI AAMFGSKNVL SYILKTGKAD VNKSCGSDSA TALHCAVDGA SPASAQIIKL  120
LLESSANPNA VDARGNRCYD LVVSMPSVYN TRKKAVQSLL EGANNVYKKE ATSIGISSSL  180
NERGKVAAGT AEFPVSPRYK EFPVDHSLPD IKNGIYSTDE FRMYTFKVKP CSRAYSHDWT  240
ECPFAHPGEN AKRRDPRKYQ YSCVPCPEFR KGSCSKGDSC EYAHGIFECW LHPAQYRTRL  300
CKDEMACTRR VCFFAHKPEE LRPLYACSGS ALPSPTSYSP GGANSLDICS SLSSPDGGGS  360
GSSPVWQAPQ AKLPKSRLNL ALSARDVNLD IQSIGLESRR LMQKLMMEEM VSSALSPNSS  420
TWRNSLPTSP SFASPVPSPT NIWGSASNYS PSHSKVIGSP AAYGLDLSGG GVSLRSPSEI  480
PSPSKNSIGM ESSSSTLFGW GSPDGKLDWS IRRDEFNKMN KSNSFAFRST ANLVATPELA  540
EDAIDELDVS WVSSLVKDSS SNNYSTMLTH EQFNVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YGP1F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173717.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_025626570.10.0zinc finger CCCH domain-containing protein 66-like
TrEMBLA0A445AMX60.0A0A445AMX6_ARAHY; Uncharacterized protein
STRINGGLYMA11G27130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2397633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-156C3H family protein