PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.YF2HP

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 325aa MW: 36506.3 Da PI: 5.754

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.YF2HP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.1	8.8e-34	178	235	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp+vv++tYeg+H h+ Araip.YF2HP 178 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHIHP 235 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	6.9E-118	1	325	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	3.4E-34	162	237	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-28	169	237	IPR003657	WRKY domain
PROSITE profile	PS50811	31.927	172	237	IPR003657	WRKY domain
SMART	SM00774	1.5E-39	177	236	IPR003657	WRKY domain
Pfam	PF03106	5.1E-26	178	235	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEKDNMDLKK TEDAVAFGSS NGYYNNPLLL SSAFDFSCEV EKSSFMELLG VQDYYNNSGA 60 VLDLPQLSKA TVFPFTTVNA SCDDTAKECS EVLNQKHQPA TPNSSSISSA SSEAVNDEHN 120 KTVEQDDDDD DDDSEEDEGE EEQQKKTKKE LKAKKTKQKR QREPRFAFMT KSEVDHLEDG 180 YRWRKYGQKA VKNSPFPRSY YRCTSASCNV KKRVERSFTD PSVVVTTYEG QHIHPSPVMP 240 RSAIAGVGSP MMPPAVSTAN LGSLMPGNYM SHYHQHRHHH QQLLVNTLFS LGIPYNNSNN 300 IDNSSFSQDN GLLQDIVPSH MLKEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	167	237	7	77	Probable WRKY transcription factor 4
2lex_A	5e-28	167	237	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	159	QKKTKKELKAKKTKQKR
2	156	161	KQKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.YF2HP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM587697	1e-113	KM587697.1 Glycine max clone GmWRKY3 WRKY mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016176911.1	0.0	probable WRKY transcription factor 23
Refseq	XP_025676784.1	0.0	WRKY transcription factor 23
Swissprot	O22900	2e-62	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A444XIE6	0.0	A0A444XIE6_ARAHY; WRKY transcription factor
STRING	AES61632	1e-112	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-46	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]