PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Y9RDS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 26389.1 Da PI: 10.6862 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.9 | 5.6e-18 | 119 | 153 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Araip.Y9RDS 119 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 153 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.4E-17 | 113 | 163 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.36 | 113 | 149 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-16 | 115 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 117 | 151 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.24E-13 | 118 | 165 | No hit | No description |
Pfam | PF00320 | 7.3E-16 | 119 | 153 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 119 | 144 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MQLISGMKRP NDDASSEAHK FRAEPNRKSP IFNSEVSVPA KARSKRSRVP PCNWTSRLLV 60 LSPTPTPTTS SSSEPDVMVP ISTPTPVSFT IPVTGKKPGK TTGRKKEGGD CGSGDGRKCL 120 HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH SNSHRKVLEL 180 RRQKEMMRAQ QHHHQHQQQF IQHHHHHQNM MFDVPTNADD YLIHQHVGPD FRQLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Y9RDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207805.1 | 1e-177 | GATA transcription factor 12-like | ||||
Refseq | XP_025657496.1 | 1e-177 | GATA transcription factor 12-like | ||||
Swissprot | P69781 | 2e-76 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A445CVT2 | 1e-140 | A0A445CVT2_ARAHY; GATA transcription factor | ||||
STRING | Gorai.009G049300.1 | 4e-97 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-75 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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