PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Y5APX

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 455aa MW: 47139.8 Da PI: 7.1375

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Y5APX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.2	1e-40	42	155	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Araip.Y5APX 42 TAPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphtfh 139 5679*****************************************************************99988888888888555554444444444 PP TCP 89 ...............k 89 + Araip.Y5APX 140 aaalalahhhpsyeeA 155 4444333332232220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-39	47	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	48	102	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGGSISSSSS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR 60 RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR 120 SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHPHT ALLGFHPHHA QHQHLMTADQ 180 IAEALPGGAA DSSENYMRKR FREDLFKDES NHQSESQNNE SGGTGAVAAD GSSPKPFKTN 240 LQMQLQQQQP QPEGGGAGGG GGSSGHGLLR QSNLVPATAM WAVAPAPATA GAPGSTIWML 300 PVTAGGAGGV ATGAAASEAQ MWPFAHQGGS GGGGGGGNNT LQGPLHLMPR FNLSPSGGVE 360 FQQEGRGGLQ LGSMVMPAAQ QQQQPPSQHL GLTMSESNLG MLAALNAYTR AGLNMNMNMN 420 INSSSSHHHH HHHHQPPPPP PQAADSGEDG PNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGGSISSSSS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR  60
RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR  120
SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHPHT ALLGFHPHHA QHQHLMTADQ  180
IAEALPGGAA DSSENYMRKR FREDLFKDES NHQSESQNNE SGGTGAVAAD GSSPKPFKTN  240
LQMQLQQQQP QPEGGGAGGG GGSSGHGLLR QSNLVPATAM WAVAPAPATA GAPGSTIWML  300
PVTAGGAGGV ATGAAASEAQ MWPFAHQGGS GGGGGGGNNT LQGPLHLMPR FNLSPSGGVE  360
FQQEGRGGLQ LGSMVMPAAQ QQQQPPSQHL GLTMSESNLG MLAALNAYTR AGLNMNMNMN  420
INSSSSHHHH HHHHQPPPPP PQAADSGEDG PNSSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Y5APX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197271.1	0.0	transcription factor TCP8
Refseq	XP_016197274.1	0.0	transcription factor TCP8
Refseq	XP_025645646.1	0.0	transcription factor TCP8
Swissprot	Q9C518	4e-75	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A444ZC14	0.0	A0A444ZC14_ARAHY; Uncharacterized protein
STRING	EOX97160	1e-144	(Theobroma cacao)
STRING	GLYMA16G00580.1	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-57	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]