PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y2JJ8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 393aa    MW: 45394.8 Da    PI: 9.6605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y2JJ8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.8e-111194186
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                 ffkv + ++ l  g l+lpk+f+ ++ + +  +s+ + l  ++g + ev  + r  +g +v++ GWkeF++   L++  f++F+++ 
  Araip.Y2JJ8 11 FFKVILEKNLLDDGFLRLPKSFVHNYwKRI--TSRSVFLSLPNGAELEVHWS-RDERGDVVFGHGWKEFAQYVSLQATQFLLFRYEL 94
                 899999*****************8888666..456799999**********4.555666*************************873 PP
2B346.47.3e-152633391087
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  ++ +++lv+p  fa+ + g+ke++ +l l d  ++ W+v++  r + +r +++t+GWk+F     Lk gD +vF+l++ 
  Araip.Y2JJ8 263 YSDRDLLVIPSYFAKPILGNKEGNAKLFLVDDPNKCWDVQM--RISACRqFIITNGWKKFSTFYSLKLGDACVFELVDP 339
                  567899***********8899999*****************..666666699***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-143125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-155113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.14E-111093No hitNo description
PROSITE profilePS5086310.98311113IPR003340B3 DNA binding domain
PfamPF023621.6E-91194IPR003340B3 DNA binding domain
SMARTSM010190.001411113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-17247349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-18248350IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.478254350IPR003340B3 DNA binding domain
SMARTSM010193.2E-7255352IPR003340B3 DNA binding domain
PfamPF023623.0E-12263349IPR003340B3 DNA binding domain
CDDcd100172.48E-12269350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSQERDVVH FFKVILEKNL LDDGFLRLPK SFVHNYWKRI TSRSVFLSLP NGAELEVHWS  60
RDERGDVVFG HGWKEFAQYV SLQATQFLLF RYELKKTNNN NNNKFYVIVL GSSGLEIKYP  120
CSNSEKKNEN VNVNVVEKGQ KGEKKSDGSF EFVNGKRRKS LLSPPQSPPP PPPPLVISDD  180
ETNSFKRKSI IKEEPEDYSI DGEINTTKRK RRASRNFDYI AKEKDYDNPE VLDNKTMKKF  240
QEKVKSRFQT GNPFFVCALG KTYSDRDLLV IPSYFAKPIL GNKEGNAKLF LVDDPNKCWD  300
VQMRISACRQ FIITNGWKKF STFYSLKLGD ACVFELVDPI DILFKVHIRS YGEDPLTPSS  360
PERVIPTEYI KNYSVSSGTI LQPCKFMRRE NGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y2JJ8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178709.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_025686052.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A444XB110.0A0A444XB11_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-08B3 family protein