PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XZ3D1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27680.6 Da PI: 10.2884 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.1 | 2.6e-27 | 80 | 166 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++ + r fvC+keg+r ++k++ + r+raetr+gCka+++v+k ++g w+vt++++eH H+l+ Araip.XZ3D1 80 FYNAYATSVGFIVRVSKLSRSRIDNSAIGRIFVCNKEGYRMTDKRE--NVIRQRAETRVGCKAMIMVRKIRSGSWVVTRFVKEHRHPLV 166 ******************************************9988..9999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-25 | 80 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
FWDSPKLTRS CSNLERRDIL GNTIHQFPDS KSQSFENLQE LTAGKVAANL KGPRSRIYSN 60 SPVEPYVGQE FELEAEAHAF YNAYATSVGF IVRVSKLSRS RIDNSAIGRI FVCNKEGYRM 120 TDKRENVIRQ RAETRVGCKA MIMVRKIRSG SWVVTRFVKE HRHPLVGPGG GRRDFIYEQY 180 PLTAEKKRSA TYKRHLELIL KHIDEYNESL SKKIQHIVDN VKKMVSKEEQ SQLNFQLATL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XZ3D1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025679133.1 | 1e-147 | protein FAR1-RELATED SEQUENCE 4-like | ||||
TrEMBL | A0A444YNU1 | 1e-146 | A0A444YNU1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007131945.1 | 2e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-80 | FAR1 family protein |