PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XJ3T4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37622.6 Da PI: 7.9188 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.1 | 5.2e-17 | 33 | 80 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 lppGfrFhPtdeel+++yL +k+++++++ ++i++vd++k+ePw+Lp+ Araip.XJ3T4 33 LPPGFRFHPTDEELITCYLINKISDSNFSG-RAITDVDLNKCEPWELPA 80 79*************************999.89**************93 PP | |||||||
2 | NAM | 68 | 2.5e-21 | 80 | 132 | 77 | 128 |
NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 at++gyWk+tgkdke+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ Araip.XJ3T4 80 ATNTGYWKTTGKDKEILNSvTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 132 6899*************9989999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.898 | 1 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-46 | 30 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-21 | 34 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MQKEKEAITA NKEGTNKKDI GIMECCHGKE ETLPPGFRFH PTDEELITCY LINKISDSNF 60 SGRAITDVDL NKCEPWELPA TNTGYWKTTG KDKEILNSVT SELVGMKKTL VFYKGRAPRG 120 EKSNWVMHEY RIHSKSTFRT TKDEWVVCRV FQKSAGAKKY PSSNHASRAM NPFNLEIGHH 180 NIVPPPPMMQ LGDPAAAHFL YGRNYMNTAE LAEVARVLRV GTGSTSTNLP GMQPQINYPV 240 AASSPGVGFT ISGLNLNLGG GGGGTVVATT QPVLRPMQPT PPSQTLGMVP HHQVHHDVSS 300 NMISGAENVG YVNEISNTNG GHGNRFMGMD HCMDLDNYWP SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-35 | 20 | 159 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XJ3T4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025684413.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 isoform X3 | ||||
TrEMBL | A0A444X766 | 0.0 | A0A444X766_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G08320.2 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5073 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 4e-78 | NAC domain containing protein 38 |