PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X6A5P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 116aa MW: 12874 Da PI: 10.4423 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 82 | 100 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cgk F++ L H+ Araip.X6A5P 82 CKECGKGFPSLKALCGHMA 100 *****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.8E-6 | 82 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MQHGILLQLQ QTHTIKRKTK EAVCVGHFFL RACSKPLIQR KHDFLATNGS NSSYGGSGYG 60 YGLRENPKKT KSFVDANHNK LCKECGKGFP SLKALCGHMA FILILKPLFQ LGDPRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X6A5P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020979475.1 | 7e-23 | putative cell division cycle ATPase isoform X1 | ||||
Refseq | XP_029148627.1 | 7e-23 | putative cell division cycle ATPase isoform X1 | ||||
TrEMBL | A0A444Z4X1 | 2e-21 | A0A444Z4X1_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-09 | C2H2-like zinc finger protein |