PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X4GVE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Nin-like | ||||||||
Protein Properties | Length: 199aa MW: 23612 Da PI: 5.0787 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.3 | 8.7e-25 | 90 | 140 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++e++ ++++k+F+lpi++AA++++++lT+LKr+CR++ IkRWPhRkiksl Araip.X4GVE 90 KSELEYDEIKKHFDLPITEAASKMNIGLTLLKRRCRELSIKRWPHRKIKSL 140 67899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.847 | 81 | 162 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-21 | 93 | 140 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEFFNNELDS FSNDIDKIME ISPMDDFDDW APLLTYKSTQ KLFLNDLPEV DNDFDDLPPL 60 DDFKKEREEE DQEHKQLLQL APISTIKNKK SELEYDEIKK HFDLPITEAA SKMNIGLTLL 120 KRRCRELSIK RWPHRKIKSL HLLIQTLKEI GLDNEVEMLE QEINMLKQVP GTEITQETKK 180 LRQAYFKANY KRRKLLASN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X4GVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020962429.1 | 1e-143 | protein RKD4 | ||||
Refseq | XP_025667689.1 | 1e-143 | protein RKD4-like | ||||
Swissprot | Q9LVU8 | 2e-35 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A445CAZ2 | 1e-142 | A0A445CAZ2_ARAHY; Uncharacterized protein | ||||
STRING | AES72521 | 2e-51 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-37 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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