PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X496W | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 432aa MW: 47573.3 Da PI: 10.5786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.4e-13 | 190 | 234 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky Araip.X496W 190 PWTEEEHRMFLVGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 234 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 5.2E-4 | 35 | 55 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.515 | 36 | 53 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.239 | 183 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-9 | 187 | 237 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 189 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-18 | 189 | 238 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.9E-11 | 189 | 233 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-10 | 190 | 234 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.32E-9 | 190 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
NQSSRNLHLL LLFFFIFFFF LFRVISPSTE SIGMTRRCSH CSNNGHNSRT CPNRGGGGGG 60 GGGVKLFGVR LTDGSIIKKS ASMGNLMTLH HHCSSPSSSF VAAAGDNPGS PDPVGYLSDD 120 PAHASSFANR RGERKKGIVI AFHGMQPKKM NNQHFLNFLS HFNFKLGTFS FFLVVKVKKV 180 TKLRILLGVP WTEEEHRMFL VGLQKLGKGD WRGISRNFVV SRTPTQVASH AQKYFIRQSN 240 ATRRKRRSSL FDMAPDMPTD PPSVLEKQVL LLTSENSQSP NVKSQPSLNL SLKSEVDPME 300 IASEENVKEN NVANGLKPKA AEYFPTYVPV RFSIWPSLEA SFQESNGVET SHHEVVKPIP 360 VVPKNPVNVD ALVGMSNLSI GNTQMILERE PSPLSLKLLG EPSRQSTFHA NTHAPVGRTD 420 LSSGKNNPIQ AV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X496W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169880.1 | 0.0 | transcription factor MYBS3 | ||||
TrEMBL | A0A444Y907 | 0.0 | A0A444Y907_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445CFI0 | 0.0 | A0A445CFI0_ARAHY; Uncharacterized protein | ||||
STRING | AES67930 | 1e-159 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7719 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 4e-82 | MYB_related family protein |