PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X3D7D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 358aa MW: 40147.2 Da PI: 4.9818 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.1e-19 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Araip.X3D7D 63 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 116 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.5e-42 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk ++++L++++++L++++ke Araip.X3D7D 62 QKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQIKE 154 69****************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-19 | 53 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.799 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-18 | 61 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-17 | 62 | 119 | No hit | No description |
Pfam | PF00046 | 5.9E-16 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-20 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-17 | 118 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MKRTGSSSDS LGALMTICPS STEEQSPRSN HVYGHDPLFQ SMVLDGLDEE GCTVEESGHH 60 SQKKRRLSVE QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 120 ERDYGVLKNN YDALKVNHDA LKQDNDALHK QIKELKTRLQ EENTASDVSV KEEQITMPES 180 EEKLLVMNEE HNTTTPDETS ILGSGSNVND HHLYHDNCFN DNSDHAVVAL GATTTSPSPS 240 PSSPPLFPSD FNKDGSSDSD SSAILNEDTK DAISSSGVLQ SNHHFLMFSE SPALKFNCSM 300 LASSSSMNCF QFQKPHQTTQ YVKMEEHNFI GAADEACNLI FSDEQAPTLH WYSSDQWG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X3D7D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016180931.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 isoform X1 | ||||
Refseq | XP_025681444.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A444X0M5 | 0.0 | A0A444X0M5_ARAHY; Uncharacterized protein | ||||
STRING | POPTR_0005s07290.1 | 1e-122 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-69 | homeobox protein 16 |