PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.W9PGD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 13760.8 Da PI: 9.0432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 21 | 62 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Araip.W9PGD 21 FTPEEDDSIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 62 9******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.9E-18 | 6 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.182 | 13 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-11 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 20 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-12 | 20 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MLSSLLRWCN QLSPPVEHWA FTPEEDDSII RAHARFGNKW ATIARLLSGR TDNAIKNHWN 60 STLKCKCASM GPIDDPHFVQ PLKRSVSTSA AVPVSTVVVR YSLPTVMVTT EVAGRGPTHP 120 CPSPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-20 | 7 | 67 | 45 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-20 | 7 | 67 | 45 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.W9PGD |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208674 | 1e-109 | KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172696.1 | 3e-85 | transcription factor MYB44-like | ||||
Refseq | XP_025678181.1 | 3e-85 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 7e-35 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A444YIH9 | 2e-74 | A0A444YIH9_ARAHY; Uncharacterized protein | ||||
STRING | XP_004511885.1 | 1e-42 | (Cicer arietinum) | ||||
STRING | AES94624 | 1e-42 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20824 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-35 | myb domain protein 73 |
Publications ? help Back to Top | |||
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