PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.W8RW3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27944.8 Da PI: 8.8808 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 19 | 63 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg W + Ede+l ++v+q+G +W++Ia++++ gR+++ +k++w+ Araip.W8RW3 19 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSDNAVKNHWHV 63 899*****************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.29 | 14 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 19 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-14 | 19 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-18 | 20 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-13 | 22 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEDSSNNNNT CDDSKICPRG HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ GRSDNAVKNH 60 WHVIMARKQR EQSKICGKRT FQDMMIFNNN NDSNSSSSSS NIIKRPARVI GLEYSRFFDF 120 RNLDSNKAST SWNFASSVPP TVTDSFRKGG GGKDYFTING SNIYLPEGSR TSDRFYCRVF 180 PGPSTTTTAT TAPFGSSNGF SSSLQNYKRI VPNPFAFKGS STEKEKEEDH EPKNEVPFID 240 FLGVGVSSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.W8RW3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020961987.1 | 1e-151 | myb-like protein AA | ||||
TrEMBL | A0A445BSY7 | 1e-140 | A0A445BSY7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G42110.2 | 8e-58 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28702 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-21 | myb domain protein 52 |