PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VZ67A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 271aa    MW: 29930.3 Da    PI: 7.0675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VZ67AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19101155256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq  +Lee F++ ++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Araip.VZ67A 101 RKKLRLSKEQAAVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 155
                  788899***********************************************98 PP
2HD-ZIP_I/II1261.7e-40101190191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEe+F+e ++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Araip.VZ67A 101 RKKLRLSKEQAAVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 190
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.0E-201164IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-1886151IPR009057Homeodomain-like
SuperFamilySSF466896.42E-1987158IPR009057Homeodomain-like
PROSITE profilePS5007117.55697157IPR001356Homeobox domain
SMARTSM003893.6E-1599161IPR001356Homeobox domain
CDDcd000862.98E-14101158No hitNo description
PfamPF000462.9E-16101155IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PfamPF021832.2E-11157191IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-27157200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MATPDEKEKM SLDLSSETRS FLRGIDVNSV PTFTAATAAC EDENGVSSPN STVSSISGKR  60
SEREPNGNDE NEAAERASYS RGSDEEDGGG IGGDADGDSS RKKLRLSKEQ AAVLEETFKE  120
YNTLNPKQKQ ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTEENRRL  180
QKEVQELRAL KLSPQLYMHM NPPTTLTMCP SCERVAVSST GSSSSSATMQ SAPASASQNQ  240
MGPNIQRPVP VNPWGAMSIQ RRPIESPTTR P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105SRKKLRL
2149157RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VZ67A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182733.10.0homeobox-leucine zipper protein HAT3 isoform X1
RefseqXP_025632002.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-98HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A445AD610.0A0A445AD61_ARAHY; Uncharacterized protein
STRINGXP_004515372.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-79homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]