PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.VZ4BS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 213aa MW: 24063.3 Da PI: 8.719 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.4 | 4.2e-08 | 2 | 25 | 2 | 25 |
YABBY 2 dvfssseqvCyvqCnfCntilavs 25 +++ ++e+vCyv+CnfCntila + Araip.VZ4BS 2 ETMMATERVCYVHCNFCNTILACQ 25 567899***************985 PP | |||||||
2 | YABBY | 183.7 | 9.8e-57 | 45 | 185 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesastsvsseklsenedeevprvppvirPP 119 vsvP++sl+++vtvrCGhC++ll+vn+ + q l ++ ++ +++++l +ee++ +k+ +++++ ++ + e ++ ++++ r+pp irPP Araip.VZ4BS 45 QVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEHH----HQKQHLSFEESSsCKELGSSSSKCNKIAPFEPVE---SHQSHRIPP-IRPP 134 69*************************9998877765554233....3444444444330333333333333444444444...445555556.9*** PP YABBY 120 ekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Araip.VZ4BS 135 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 185 *************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-59 | 44 | 185 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 129 | 178 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.0E-5 | 133 | 179 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
METMMATERV CYVHCNFCNT ILACQKKSDA HPQQCSTKIL NHKCQVSVPY SSLLTLVTVR 60 CGHCANLLTV NMGASLQPLI PPHQEHHHQK QHLSFEESSS CKELGSSSSK CNKIAPFEPV 120 ESHQSHRIPP IRPPEKRQRV PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH 180 IHFGLKMDGN NDKQAKLDHN NGEGTQKSSN GFY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.VZ4BS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT090571 | 1e-127 | BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016188474.1 | 1e-135 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_025643184.1 | 1e-135 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 1e-68 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A445E1E9 | 1e-126 | A0A445E1E9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G10210.3 | 3e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-65 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|