PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VYY21
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 369aa    MW: 41020.2 Da    PI: 8.3326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VYY21genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07205227123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Araip.VYY21 205 HYCSVCGKGFKRDANLRMHMRAH 227
                  68*******************99 PP
2zf-C2H210.90.0014294317123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y+C+ C+ k Fs  s+L++H + +
  Araip.VYY21 294 YVCKRCNqKQFSVLSDLRTHEKHC 317
                  9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-6203230No hitNo description
PROSITE profilePS5015712.736205232IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-7205260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0022205227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SMARTSM00355160256289IPR015880Zinc finger, C2H2-like
SMARTSM0035523294316IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEIVNNSSVA SSSSSTASSS HSSSLLFNLS VLKDKLNQVQ TLVGVILSPD QNLQDSTTSM  60
AVSSMNSTIQ EIIVTATSMM FTCQQIALAF PPPPPPPPPP GTIATTVAFA NNHHELHQQH  120
QRLLINNNNN NIRGHGHGFF SSTTDSEALD NWLGESYNNT GVDCKVNNNN DDDDPSVEIS  180
DTKEGAKKLD IIELDAEDLL AKYTHYCSVC GKGFKRDANL RMHMRAHGDE YKTSAALSNP  240
LKQNNNENGD CLPKKYSCPQ EGCRWNQKHA KFQPLKSMIC AKNHYKRSHC PKMYVCKRCN  300
QKQFSVLSDL RTHEKHCGDL KWQCSCGTTF SRKDKLMGHV ALFVGHRALS IAFHQYNSKS  360
RITLSYAKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VYY21
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-74AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172215.10.0zinc finger protein STOP1 homolog
RefseqXP_025673815.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A444Y7J20.0A0A444Y7J2_ARAHY; Uncharacterized protein
STRINGXP_007150139.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.15e-83C2H2 family protein