PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VMP5P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 316aa    MW: 35739.1 Da    PI: 9.4515
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VMP5PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19129162134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Araip.VMP5P 129 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 162
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-20123174IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13126163No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15127162IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.519127159IPR000679Zinc finger, GATA-type
CDDcd002022.90E-12128156No hitNo description
PROSITE patternPS003440129154IPR000679Zinc finger, GATA-type
PfamPF003203.2E-17129162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
AEKIHVPSSG GSWDHIHDHR KEEEEEEKDG NKKSSKLLKL KILKKEERNE NQAHDDEEDH  60
GSVKWMSSKM RIMGGSDTNN FRLRFDEEGP KQQPSLSPLG TDNSSSNSNN NNSSSNRHEN  120
NNNMIVRVCS DCHTTKTPLW RSGPRGPKSL CNACGIRQRK ARRAAAAAAA AEVAASENDT  180
TLMASTDDDD GSLHGMKKKE KKLHKHNNKD KKLKAKCSAP NQLKKKHKIG TNNNKLSHRG  240
RKKVGFEDLT ISLSKNLALN VFPHDEKEAA ILLMALSYGL LHGFPSDRYL DNFYFIISTY  300
YYYCMRLVFA LWCVEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VMP5P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188963.10.0GATA transcription factor 21
RefseqXP_025644334.10.0GATA transcription factor 21
TrEMBLA0A445A2740.0A0A445A274_ARAHY; Uncharacterized protein
STRINGGLYMA15G18380.18e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-16cytokinin-responsive gata factor 1