PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UVY0A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25318.4 Da    PI: 10.6375
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UVY0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-303282151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Araip.UVY0A 32 KRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 82
                 79***********************************************96 PP
2K-box67.25.5e-231091951298
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++++  + +  ++ k++e+L+ ++R+llG++L+s+ ++eLqq+e+qLe+sl+k+R++Kn+l++eqie+l+++ek l een++L++k+
  Araip.UVY0A 109 ENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIEKLKEQEKCLLEENRKLKEKW 195
                  44555555556899**********************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.1132484IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-402483IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002680IPR002100Transcription factor, MADS-box
CDDcd002651.06E-402693No hitNo description
PRINTSPR004042.2E-312646IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-332697IPR002100Transcription factor, MADS-box
PfamPF003191.1E-263380IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-314661IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-316182IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.292111201IPR002487Transcription factor, K-box
PfamPF014861.5E-22118194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIRLRLRLPT KDSHCSGSRL LVRMVRGKTQ MKRIENETSR QVTFSKRRNG LLKKAFELSV  60
LCDAEVALII FSTRGKLYEF SSSSVNKIVE RYQRKVKDLH SLNTKQIQEN TQVKEGDDIN  120
ITKKLEQLEV SKRKLLGDGL DSCPIEELQQ IENQLERSLT KVRARKNQLF REQIEKLKEQ  180
EKCLLEENRK LKEKWLEQQR SLSKQGVLLV GERRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-202492169MEF2C
5f28_B4e-202492169MEF2C
5f28_C4e-202492169MEF2C
5f28_D4e-202492169MEF2C
6byy_A4e-202492169MEF2 CHIMERA
6byy_B4e-202492169MEF2 CHIMERA
6byy_C4e-202492169MEF2 CHIMERA
6byy_D4e-202492169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UVY0A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189945.11e-134agamous-like MADS-box protein AGL19 isoform X2
RefseqXP_025629046.11e-134agamous-like MADS-box protein AGL19 isoform X2
SwissprotO827435e-78AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A445ATZ71e-132A0A445ATZ7_ARAHY; Uncharacterized protein
STRINGXP_004515788.19e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.17e-62AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]