PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UP1EH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 309aa    MW: 34092 Da    PI: 7.3644
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UP1EHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63e-17239273135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Araip.UP1EH 239 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 273
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.4E-15233287IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15234297No hitNo description
PROSITE profilePS5011411.108237269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-13237271IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-11238285No hitNo description
PfamPF003206.2E-15239273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNMEGEFQKE QQVLLVADPA SCSKLSTSST TLDDLFSAQN TEVDVGLEWL SVFVEECFSN  60
PPSYILGPSK SVEATTTTTI TTCSSNKNPS STALLKQNNN NDSSLQNFSV PSKARSKRKR  120
LSAVTNRRRT KTPFSIWSHQ NDEPLISDPP LLKQTYWLAD SELFVLPKQQ KKDSEKDVIA  180
KDGDDDDKDG GGEKGAVVMK RGSLVSLEEC SEAEEDGDGG NNNNNNNNNN GENPMPRRCT  240
HCLAQRTPQW RAGPLGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSYLH SNSHKKVMEM  300
RMAGSVLHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116128KRKRLSAVTNRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UP1EH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935016e-69BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016162144.10.0GATA transcription factor 2
RefseqXP_025658482.10.0GATA transcription factor 2
TrEMBLA0A444YRJ50.0A0A444YRJ5_ARAHY; Uncharacterized protein
STRINGXP_007161927.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-36GATA transcription factor 9