PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UJ8LG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 88aa    MW: 9793.84 Da    PI: 4.6414
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UJ8LGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.22.6e-085188140
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                 kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk
  Araip.UJ8LG 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGK 88
                 6***************998776..8889**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-55188IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MDHSTSDCQL NAGEVDYESE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UJ8LG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371784e-58HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989500.17e-53uncharacterized protein LOC110276745
RefseqXP_020997160.12e-52protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997362.14e-52protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YCF06e-59A0A444YCF0_ARAHY; Uncharacterized protein
TrEMBLA0A444Z9P11e-59A0A444Z9P1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-07FAR1-related sequence 10