PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.U4ZBC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 27847.2 Da PI: 9.2851 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 48 | 102 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Araip.U4ZBC 48 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 102 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.008 | 45 | 105 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-32 | 47 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-26 | 48 | 103 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.4E-17 | 48 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 50 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.8E-24 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MYHAKKFSSA TMVPHKPQGG GEQVGNVGVL DGSAVRNAGP ASSGGNGKQR LRWTSDLHDR 60 FVDAITQLGG PDRATPKGVL RVMGVPGLTI YHVKSHLQKY RLAKYLPDSP ADGKDSKDEK 120 RTPGDTVTGI DSSQGLQIND ALRMQMEVQK RLHEQLEVQK QLQMRIEAQG KYLQKIIEEQ 180 QKLGSTLTNS DTLPLSHDKQ NNPPSEPSGS SDAIADSMSP LKKQRIDDGS KDGFAVSQVT 240 TKTSQKTDCS VDQLDS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-24 | 47 | 105 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.U4ZBC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016161873.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_025658181.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-73 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A444YQL0 | 0.0 | A0A444YQL0_ARAHY; Uncharacterized protein | ||||
STRING | XP_004493285.1 | 1e-153 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-76 | G2-like family protein |