PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U3B75
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 359aa    MW: 40847.3 Da    PI: 6.5891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U3B75genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000486385323
                 ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                 C+   Cgk+F +   L++H   H
  Araip.U3B75 63 CSyeGCGKTFIDAGALRKHSHIH 85
                 77779**************7766 PP
2zf-C2H215.93.7e-0590114123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   Cgk F ++s LkrH   H
  Araip.U3B75  90 FVCHyeGCGKKFLDSSKLKRHFLIH 114
                  89*******************8877 PP
3zf-C2H221.85.1e-07120144123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk Fs   nL++H++tH
  Araip.U3B75 120 FVCPheGCGKAFSLDFNLRSHMKTH 144
                  89**********************9 PP
4zf-C2H217.11.5e-05150174123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp  dCgk++ + + Lk+Hi +H
  Araip.U3B75 150 HICPysDCGKRYAHEYKLKNHIASH 174
                  68*********************96 PP
5zf-C2H213.10.0003213238123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  y Cp   C k + + + Lk H+++ H
  Araip.U3B75 213 YACPyeGCEKAYIHEYKLKLHLKReH 238
                  89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-145687IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416190IPR007087Zinc finger, C2H2
PROSITE patternPS0002806385IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-864114No hitNo description
Gene3DG3DSA:3.30.160.603.4E-1488110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.73490119IPR007087Zinc finger, C2H2
SMARTSM003550.004390114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-14101154No hitNo description
Gene3DG3DSA:3.30.160.603.4E-20111144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695120149IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4120144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-8145176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041150174IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494150179IPR007087Zinc finger, C2H2
PROSITE patternPS000280152175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-5208236No hitNo description
Gene3DG3DSA:3.30.160.606.1E-9209235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012213238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66213243IPR007087Zinc finger, C2H2
PROSITE patternPS000280215238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MYYPNDRRNV PARVPQDVVA TGGKCMLLRW VREDASKALQ EKEKEPAVPE PEPEPTTEVL  60
FLCSYEGCGK TFIDAGALRK HSHIHGERQF VCHYEGCGKK FLDSSKLKRH FLIHTGERDF  120
VCPHEGCGKA FSLDFNLRSH MKTHSQENYH ICPYSDCGKR YAHEYKLKNH IASHHEKNTA  180
VEVPKYTPPS ERQPKTTKHS GAAYGSASSD RPYACPYEGC EKAYIHEYKL KLHLKREHPG  240
HMSDENAEHA QANLDNEMDE ASDQDAYGGK RSNGKIQKQS KLKPNLKLPP SKIAKRKAPL  300
PTPATIAVTK KPWSVNGKGE AYNEEDSEET EEEDRDNVED GWRYAGNNDD DDEETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-35631748119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U3B75
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190758.10.0uncharacterized zinc finger protein At4g06634 isoform X2
RefseqXP_025639328.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-144YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A445DN850.0A0A445DN85_ARAHY; Uncharacterized protein
STRINGXP_004485467.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]