PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.TGK8R | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 159aa MW: 18807.6 Da PI: 4.7449 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.8 | 5.4e-16 | 78 | 149 | 1 | 73 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekd 73 +fY++YAk GF r+s+++k+ + ++++fvC ++g+r+++ + ++++r+raetr+gC a++ ++++++ Araip.TGK8R 78 EFYQQYAKYHGFGARRSRNEKR--GEVRIRQEFVCHRQGYRSSKFYSmPNRQKRPRAETRCGCPARMLLRMDDE 149 6****************98887..77889*************998876789999**************999874 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-13 | 78 | 148 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MESDEYDFQE DETQHDHHAE ADVDNGDADD AGGMSDNYAE DEFYAVDSVE WIGWIDFLNL 60 SKEDVLRFNF ADVDIAFEFY QQYAKYHGFG ARRSRNEKRG EVRIRQEFVC HRQGYRSSKF 120 YSMPNRQKRP RAETRCGCPA RMLLRMDDES GRCVLFRRA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.TGK8R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016199879.1 | 1e-95 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025652823.1 | 1e-95 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445ADJ3 | 3e-92 | A0A445ADJ3_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445D5K6 | 2e-92 | A0A445D5K6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16612 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 5e-10 | FAR1-related sequence 11 |