PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TGH67
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 293aa    MW: 32876.8 Da    PI: 9.4401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TGH67genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+ksF+++  L  H  +H
  Araip.TGH67 115 YQCKTCNKSFPSSQALGGHRASH 137
                  9***************9999888 PP
2zf-C2H213.10.00029209231123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Araip.TGH67 209 HECSICGAGFSSGQALGGHMRRH 231
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-9114137No hitNo description
PfamPF139122.8E-11114139IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18115137IPR007087Zinc finger, C2H2
SMARTSM003550.013115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-9204231No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4207232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-11209232IPR007087Zinc finger, C2H2
SMARTSM003550.017209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055209236IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEEVQLEEQQ QQLLVVKGKR SKRPRPPSPS PSPPPPLEFA PIIIKSNNNN MMMMMPPPTS  60
ATTSTTTTTL DDENMAYCLI LLAQGHHHHH HHHNNNKASS SSHHDDHHEK KSIYYQCKTC  120
NKSFPSSQAL GGHRASHKKL LLPNNKSKSN NNAYDHDHEL EDLNTRTTTK TTSTMLSLQV  180
SSSNTTTIIT KRSSTNNNSA NNSRKCKLHE CSICGAGFSS GQALGGHMRR HRNFDEGDKN  240
KKPIRNHFLK LDLNLPASPE DDQRESSSKF PFQIREKVIV FSSSAPSLVD CHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TGH67
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186745.10.0zinc finger protein ZAT5-like
TrEMBLA0A445E6Y91e-114A0A445E6Y9_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.17e-31C2H2 family protein