PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.TF81A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 32845.2 Da PI: 9.6468 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.3e-12 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Araip.TF81A 54 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 98 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-16 | 48 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 49 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-6 | 52 | 104 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-18 | 52 | 101 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-10 | 54 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-7 | 56 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MVSKNPNPSE GFYLDPSALP SLVPLAATTG ASTANSAEDP AKKTRKPYTI TKSRESWTEP 60 EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKSGTSEH LPPPRPKRKA 120 AHPYPQKASK NGSPVLAQVS GSFQSSSALL ECGHVLQPDS SAMLKTPIVS AAVSSWSNNT 180 LQQKANALHG QKVNNCCSSS ESTPRAQAPV LPDFTQVYRF IGSVFDPSIT GHLQKLKRMD 240 PIDVETVLLL MRNLSINLRS PDFEDHRRLL ASYEVELETD SYINADRPMT GGQLKTAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.TF81A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016176733.1 | 0.0 | protein REVEILLE 6 isoform X2 | ||||
Refseq | XP_025677309.1 | 0.0 | protein REVEILLE 6 isoform X2 | ||||
Swissprot | Q8H0W3 | 1e-113 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A444XW96 | 0.0 | A0A444XW96_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G37520.2 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-98 | MYB_related family protein |
Publications ? help Back to Top | |||
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