PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.T7RN5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 463aa MW: 48740.1 Da PI: 8.5453 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Araip.T7RN5 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.5e-05 | 141 | 162 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C+k + +s+ k H++t+ Araip.T7RN5 141 KCERCSKKYAVQSDWKAHMKTC 162 8*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.46E-7 | 63 | 86 | No hit | No description |
SMART | SM00355 | 0.017 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.3E-5 | 64 | 86 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.46E-7 | 135 | 161 | No hit | No description |
SMART | SM00355 | 82 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MTTEPPPMPL SGEEAATLSA LDLETAPQPP APPLKKKRNL PGMPDPDAEV IALSPKTLLA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRATKEV RKRVYVCPEP SCVHHNPSRA 120 LGDLTGIKKH FCRKHGEKKL KCERCSKKYA VQSDWKAHMK TCGTREYRCG CGTLFSRRDS 180 FVTHRAFCDA LAEESAKAQT LSTDDKDGVG AGAGAGVTAA SSSSPPQPPL TPSTSVVSPT 240 LSIQSSEIPE NATRLSPPTT CVAKAVTTST VLATVLASSA GAAAPSTTSF PNVTAATSLS 300 LSVPLYLSNN VNDPRHHYTA CPQPSTTAAL SATALLQKAA QMGAASSNTS LLRGLGLATS 360 STGYHPQDES GIENPIMQWN MSSHVKQENP SLADHNLGLG LPCGDPGFAD VMMGSPPMTR 420 DLLGLGIGGN GGDNVSRGGL SALLTSFGGN FDSSGDAGGV RHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 136 | 205 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 136 | 205 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.T7RN5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016167715.1 | 0.0 | protein indeterminate-domain 1 | ||||
Refseq | XP_025666419.1 | 0.0 | zinc finger protein ENHYDROUS | ||||
Swissprot | Q9LVQ7 | 1e-126 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A445CBQ9 | 0.0 | A0A445CBQ9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G03630.2 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-111 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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