PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SN4PX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 308aa    MW: 34178.9 Da    PI: 6.8445
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SN4PXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.6e-17207241135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C + +Tp+WR gp g+ktLCnaCG++y++ +l
  Araip.SN4PX 207 CLHCAAEQTPQWRTGPMGPKTLCNACGVRYKSGRL 241
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-7917292IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.295201237IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16201251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-14202238IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-14203265No hitNo description
CDDcd002022.74E-13206253No hitNo description
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14207241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELPEYFIAG YFAATPDQLS PEKRHADQKP GEVFTIDDLL DFSNANTDAI TSDGFFNNTA  60
GNSTDVSVVT AVDSCNSSIS GSSFRCFAGV DPQFSEEFCV PYDDVAELEW LSNFVEESFP  120
AEEELKTLHL ISGVKPQTPQ SSSSSDARNA PLFHPETPLP AKARSKRSRA APGDWSTRVV  180
RVVKTDAEQR PAKKRDGANS EASGRKCLHC AAEQTPQWRT GPMGPKTLCN ACGVRYKSGR  240
LVPEYRPAAS PTFVSTKHSN SHRKVLELRR QKEMQHHRLI GQSSVFDISN GEDSYLIHRH  300
NRPDYRNV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SN4PX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016170053.10.0GATA transcription factor 9
RefseqXP_025673549.10.0GATA transcription factor 9
SwissprotO826323e-82GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A444Y8X70.0A0A444Y8X7_ARAHY; GATA transcription factor
STRINGXP_007135644.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-72GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]