PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S6IIC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 269aa    MW: 30943.9 Da    PI: 5.2224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S6IICgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l+  v+++G  +W+  ++  g+ R++k+c++rw++yl
      Araip.S6IIC 14 KGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding605e-1968112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ T+eE+el+++++++lG++ W++Ia++++ gRt++++k++w+++l
      Araip.S6IIC  68 GNYTQEEEELIIKLHQELGNR-WSLIAERLP-GRTDNEIKNHWHSHL 112
                      789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.914961IPR017930Myb domain
SuperFamilySSF466893.75E-3111108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002496.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-231568IPR009057Homeodomain-like
CDDcd001672.71E-101661No hitNo description
PROSITE profilePS5129427.7362116IPR017930Myb domain
SMARTSM007173.7E-1866114IPR001005SANT/Myb domain
PfamPF002491.9E-1768112IPR001005SANT/Myb domain
CDDcd001671.11E-1369112No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2669114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVRAPFYDKY GVKKGAWSRE EDQRLIAFVQ RYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TQEEEELIIK LHQELGNRWS LIAERLPGRT DNEIKNHWHS HLKKLSSKHN  120
NNEINPSSES ESESKSNNPI DDDILEGKHT NQPKESVRPS YDYVDSANNN KFQHRVLESS  180
SSTETSSYTD DEVGHSYYSL ITPNNVEQST IMNNSPTSSE DYCVVPSVSF EEFGGDFWTE  240
PFIVANNDAY GNDEIIISGE DDVGFLVPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-29141144103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-29141144103C-Myb DNA-Binding Domain
1msf_C2e-29141144103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S6IIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-47AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193299.10.0transcription factor MYB14-like
RefseqXP_025641077.10.0transcription factor MYB14
TrEMBLA0A445A5D40.0A0A445A5D4_ARAHY; Uncharacterized protein
STRINGXP_007132613.13e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-58myb domain protein 15