PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RX5RL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 596aa    MW: 66751.1 Da    PI: 9.5259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RX5RLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-08504553147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
      Araip.RX5RL 504 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 553
                      567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.05E-6310389IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.75499558IPR017930Myb domain
SMARTSM007171.6E-7503556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10504554IPR009057Homeodomain-like
CDDcd116608.31E-17505555No hitNo description
SuperFamilySSF466891.11E-15505586IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVLHKRLNYS FDGYHVPVIP RASRSVRGRG SIRKKRDNSH IHAFEILASV AGNFLHANES  60
SNPENTSFAK EADLFHGNNV KEKENDETGL FKGDLFTHGT CSKITTTCVP SLQGEHDNQS  120
HIEGQGQNVL EREDGGMKRR NSNEKIIHIK GSYVGVNEPG HKVFKDCTLE NNVEKPLPEC  180
RNHLDSSHGG SIARKLVNTD NDENFARCTQ SNLRNKISSP PLDTPKLKDA SPIASDENNS  240
RDNSELENLQ RMYPFKKRKF FNQTSSSTSD RGSQCQGVFD FSDSKVNSTI HGTGIEESSS  300
IAGQQVHPGS KGCNVKLSIK SFKVPELFID IPETATIGSL KRTVMEAVTT ILGDELHIGI  360
LLQGKKIRDD NKTLIQTGIC QDDKRHRLGF MLEPRHTRIS SPSYNEDPCY LTSSPQQKLS  420
RQSTSLMFQQ GTYNVSQERS LIKIESCAEG DLKLSSSVAD TSANNNMSKC RALVAVPAIN  480
MQALAVVPLR RKSGNPDFGQ RRIRRPFSVL EVEALVQAVE KLGTGRWRDV KQRAFDHAKH  540
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLAA HAYWSQQQCK HQLKPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-554885961109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249258QRMYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RX5RL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063621e-96AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016195598.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_020976951.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_020976952.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_029147948.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_029147949.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_029147950.10.0telomere repeat-binding protein 5 isoform X1
TrEMBLA0A445DGJ00.0A0A445DGJ0_ARAHY; Uncharacterized protein
STRINGGLYMA07G15940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-106TRF-like 2