PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RWH4R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 349aa MW: 39180 Da PI: 7.1981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RWH4R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.7	4.4e-09	84	133	1	57
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++++ Araip.RWH4R 84 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP-----TEKTN 133 6*************998776..8889**********9998877.....22223 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-6	84	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
RLGYLFLSLQ LDLRFLFLIC CFLKSKFDLV LKIMDHSTSD SQLNAGEVDY ESESNEVPEP 60 LSVVDDELVP KVGMTFTTLE DAGKFYRNYA KAAGFSTRVR CTNRKGNEIK NQLITCSREG 120 KWKSKISPTE KTNPTAGCAG SFTPLLSKQS RDAQIAQGTK HVHSSYDREQ RGGRSLIQFV 180 KQYDNCLGSR EQAERESDAA DFHTLIPCAT KSCIEAQFQD AYTHAKFREV QAQFRGKANC 240 ITKLKNSALG YSVYDVGEQV SSSIFNKFVV TYDSVAAEPS VTEIHTGTME QEGKEVTHTH 300 QEQPRRATNR AKKQEVRPIG FSFQNICEFA SESEELTAIL HRAYDNVGV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

RLGYLFLSLQ LDLRFLFLIC CFLKSKFDLV LKIMDHSTSD SQLNAGEVDY ESESNEVPEP  60
LSVVDDELVP KVGMTFTTLE DAGKFYRNYA KAAGFSTRVR CTNRKGNEIK NQLITCSREG  120
KWKSKISPTE KTNPTAGCAG SFTPLLSKQS RDAQIAQGTK HVHSSYDREQ RGGRSLIQFV  180
KQYDNCLGSR EQAERESDAA DFHTLIPCAT KSCIEAQFQD AYTHAKFREV QAQFRGKANC  240
ITKLKNSALG YSVYDVGEQV SSSIFNKFVV TYDSVAAEPS VTEIHTGTME QEGKEVTHTH  300
QEQPRRATNR AKKQEVRPIG FSFQNICEFA SESEELTAIL HRAYDNVGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RWH4R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-116	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020993575.1	5e-75	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444Z793	1e-140	A0A444Z793_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-06	FAR1-related sequence 10