PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RQ8XW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 111aa    MW: 12642.5 Da    PI: 6.388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RQ8XWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133654523
                 TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                  Cgk+F +   L++H  +H
  Araip.RQ8XW 36 GCGKTFIDVGALRKHSHSH 54
                 7**************8877 PP
2zf-C2H213.90.000165983123
                 EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                 ++C+   C + F ++s LkrH   H
  Araip.RQ8XW 59 FVCNyeGCERKFLDSSKLKRHFLIH 83
                 89*******************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355213254IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-83455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-95496No hitNo description
Gene3DG3DSA:3.30.160.602.2E-135678IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0135983IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0925988IPR007087Zinc finger, C2H2
PROSITE patternPS0002806183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-97998IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MHALKMEDAL KALQEKEKEP VVPEPKPEPT TEVYEGCGKT FIDVGALRKH SHSHGERQFV  60
CNYEGCERKF LDSSKLKRHF LIHIGERDFV CPHEGCGKIQ IEVELEAIVA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-15271093102PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RQ8XW
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019464675.11e-48PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L33e-33YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1J7HJD52e-47A0A1J7HJD5_LUPAN; Uncharacterized protein
STRINGMigut.B00804.1.p3e-44(Erythranthe guttata)
STRINGXP_008781553.13e-44(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-33C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]