PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RA8N4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 370aa    MW: 40830.8 Da    PI: 9.9326
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RA8N4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.3e-1552135186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v +L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + +++        s++p++++l+
  Araip.RA8N4  52 EWSEGAVSTLLEAYESKWVLRNRAKLKGHDWEDVARHVssraNSTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLYSRLD 135
                  5*************************************88777778889999****************999996......4799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-2050135No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEDKDEDSNN NKSNNQHHHN HPKEEPLITR KHNTIGGGSG SGSGGDRLKR DEWSEGAVST  60
LLEAYESKWV LRNRAKLKGH DWEDVARHVS SRANSTKSPK TQTQCKNKIE SMKKRYRSES  120
ATADASSWPL YSRLDLLLRG TGPVPTSSTL AASPLPLSPT LQAVPVTVTV AAAAATGSHQ  180
SLHFSNNQQP LMLLEQPPSS QVLHQPPLPP GAAAPPPPAT TAQNSHGSNG VERVITKEDG  240
LLGTKSCEHV SNKNEVDTDS STPALYSEKD KLRCNKRKMK MESNKQRRRK EEMEIAGSIR  300
WLAEVVVRSE QARMDTMKEI EKMRVEAEAK RGEMDLKRTE IIANTQLEIA RIFASVNNKG  360
VDSSLRIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275289KRKMKMESNKQRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RA8N4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181753.10.0trihelix transcription factor ASIL2
RefseqXP_025682477.10.0trihelix transcription factor ASIL2
TrEMBLA0A444XAA20.0A0A444XAA2_ARAHY; Uncharacterized protein
STRINGXP_007148925.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-59sequence-specific DNA binding transcription factors