PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.QC09Z | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 378aa MW: 41109.5 Da PI: 7.1116 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.6e-18 | 260 | 294 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l Araip.QC09Z 260 CLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRL 294 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.5E-16 | 254 | 304 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.044 | 254 | 290 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.95E-14 | 257 | 317 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-14 | 258 | 292 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.26E-14 | 259 | 306 | No hit | No description |
Pfam | PF00320 | 9.6E-16 | 260 | 294 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 260 | 285 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEVPEYFVGG YYGTGGDQFS TEKRHGVGGG DQKHGGYGGG GEPFAIDDLL DFSNADAIMS 60 DGFFENVAGN SSTDSSNVTA VDSCNSSVSG GDNHFPAGIV PRAFSSGDPQ FSGGELCVPY 120 DDMAELEWLS NFVEDSFSTE EDLKTLQLLS GGGAAAINGR KPQTPESSSS SENALHPPFD 180 TARNAPFLLH QETPLPGKAR SKRSRAAPGD WSTRLLHLST PPPPKLQTSA MEHKPPTPKV 240 AAPTMTKRRE ANAECLGRKC LHCGADKTPQ WRTGPMGPKT LCNACGVRFK SGRLVPEYRP 300 AASPTFVSTK HSNSHRKVLE LRRQKDMQRQ QQQQQQLMSQ TSIFGVSNGG DEFLIHHHHH 360 HPHHHQQHHC GPDFRHVI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.QC09Z |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177035.1 | 0.0 | GATA transcription factor 9 | ||||
Refseq | XP_025676401.1 | 0.0 | GATA transcription factor 9 | ||||
TrEMBL | A0A444XCG8 | 0.0 | A0A444XCG8_ARAHY; GATA transcription factor | ||||
STRING | XP_007135644.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-66 | GATA transcription factor 9 |